Predicting and generating antibiotics against future pathogens with ApexOracle

Tianang Leng ^†  Fangping Wan ^†  Marcelo Der Torossian Torres   Cesar de la Fuente  
University of Pennsylvania
^†: Equal contribution

---

Content Direction

• Quick start implementation for molecule embedding extraction with our Diffusion Language Model (DLM) can be found at HuggingFace 🤗
• Code for training our DLM can be found in folder DLM

---

Citation

If you find this repo helpful, please cite:

@article{leng2025predicting,
  title={Predicting and generating antibiotics against future pathogens with ApexOracle},
  author={Leng, Tianang and Wan, Fangping and Torres, Marcelo Der Torossian and de la Fuente-Nunez, Cesar},
  journal={arXiv preprint arXiv:2507.07862},
  year={2025}
}