An analysis and visualization platform for 'omics data

SortMeRNA: next-generation sequence filtering and alignment tool

sensitive and precise assembly of short sequencing reads

A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

A tool for representing genomic potential and transcriptomic expression into KEGG pathways

Meta-Omics Software for Community Analysis

Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.

The Biosynthetic Gene cluster Meta’omics abundance Profiler (BiG-MAP). A command-line tool that is able to profile the abundance and expression of a collection of gene clusters across metagenomic and metatranscriptomic data from any kind of biome, including human, plant, animal, marine, and soil microbiomes.

Pipeline for metagenome and metatranscriptome joint assembly

MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data

gNOMO2 allows integrated multi-omics analyses of microbiomes

Open-source opinionated Galaxy-based framework for microbiota analysis

A user-friendly pipeline for viral diversity analysis and characterization.

Comparative Metatranscriptomics Workflow

Genome-centric Multi-omic Analysis Workflow for the Marinimicrobia paper

The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.

Taxonomic classification of metagenomic contigs

🍰 Per sequence functional classification and taxonomic assignments

Interactive visualisation and data annotation for meta-omics data

Metagenomics and Metatranscriptomics pipeline