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Pull requests: nf-core/modules

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Pull requests list

updated module: xengsort/index Ready for Review
#12494 opened Aug 2, 2026 by LeonHornich Contributor Loading…
10 of 13 tasks
Bump trgt/merge
#12493 opened Aug 1, 2026 by bagnacan Contributor Loading…
3 tasks done
Bump trgt/plot
#12492 opened Aug 1, 2026 by bagnacan Contributor Loading…
3 tasks done
Bump trgt/genotype
#12491 opened Aug 1, 2026 by bagnacan Contributor Loading…
3 tasks done
remove setting of bowtie2_index to an empty channel
#12490 opened Aug 1, 2026 by emmanuel-tan Loading…
19 tasks done
Update pre-commit hooks size/xs
#12489 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Update nvcr.io/nvidia/tensorflow Docker tag to v20.12 size/xs
#12488 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Update dependency prettier to v3.9.6 size/xs
#12487 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Migrate pbtk to topics Ready for Review
#12486 opened Aug 1, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
Migrate plastid to topics linting
#12485 opened Aug 1, 2026 by atrigila Contributor • Draft Adopt topic channels in all nf-core modules
Migrate paragraph to topics Ready for Review
#12484 opened Aug 1, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
Migrate popscle to topics Ready for Review
#12483 opened Jul 31, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
Migrate purecn modules Ready for Review
#12482 opened Jul 31, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
Migrate amulety to topics gpu module uses GPU help wanted Extra attention is needed
#12481 opened Jul 31, 2026 by atrigila Contributor • Draft Adopt topic channels in all nf-core modules
Migrate vuegen versions topic help wanted Extra attention is needed linting
#12480 opened Jul 31, 2026 by atrigila Contributor • Draft Adopt topic channels in all nf-core modules
Migrate universc versions topic Ready for Review
#12479 opened Jul 31, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
Migrate unicycler versions topic Ready for Review
#12478 opened Jul 31, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
Migrate vcf2maf versions topic Ready for Review
#12477 opened Jul 31, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
Swap ribotish to topics size/m
#12475 opened Jul 31, 2026 by SPPearce Contributor • Draft
Swap quantmsutils to topics size/l
#12474 opened Jul 31, 2026 by SPPearce Contributor Loading…
2
Swap plink2 modules to topics size/xl
#12473 opened Jul 31, 2026 by SPPearce Contributor Loading…
3
Deep mased imp modules
#12472 opened Jul 31, 2026 by SkyLexS Contributor Loading…
10 of 17 tasks
@dialvarezs
2
canvas/germline: Added tests and missing inputs, some cleanup
#12462 opened Jul 29, 2026 by Schmytzi Contributor • Draft
9 of 17 tasks
Update module mobster
#12460 opened Jul 29, 2026 by valerianilucrezia Contributor Loading…
11 of 17 tasks
docs(orfnormalise): correct the GTF contract for rpbp and price Ready for Review
#12453 opened Jul 28, 2026 by pinin4fjords Member Loading…
3
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